IL_6OLI_086

3D structure

PDB id

6OLI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAUGC*GAGG

Length

9 nucleotides

Bulged bases

6OLI|1|S2|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLI_086 not in the Motif Atlas

Geometric match to IL_3CUL_002

Geometric discrepancy: 0.3463

The information below is about IL_3CUL_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

6OLI|1|S2|C|1395
6OLI|1|S2|A|1396
6OLI|1|S2|U|1397
6OLI|1|S2|G|1398
6OLI|1|S2|C|1399
*
6OLI|1|S2|G|1447
6OLI|1|S2|A|1448
6OLI|1|S2|G|1449
6OLI|1|S2|G|1450

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SQ

40S ribosomal protein S16

Chain SR

40S ribosomal protein S17

Chain SU

40S ribosomal protein S20

Chain Sg

Receptor of activated protein C kinase 1