IL_6OLI_088

3D structure

PDB id

6OLI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UA*UCCCCCA

Length

9 nucleotides

Bulged bases

6OLI|1|S2|C|1435, 6OLI|1|S2|C|1436, 6OLI|1|S2|C|1437

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLI_088 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.2786

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

6OLI|1|S2|U|1408
6OLI|1|S2|A|1409
*
6OLI|1|S2|U|1432
6OLI|1|S2|C|1433
6OLI|1|S2|C|1434
6OLI|1|S2|C|1435
6OLI|1|S2|C|1436
6OLI|1|S2|C|1437
6OLI|1|S2|A|1438

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SQ

40S ribosomal protein S16

Chain SU

40S ribosomal protein S20