IL_6OLI_113

3D structure

PDB id

6OLI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GACC*GUCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLI_113 not in the Motif Atlas

Geometric match to IL_4K27_001

Geometric discrepancy: 0.1751

The information below is about IL_4K27_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

6OLI|1|t|G|161
6OLI|1|t|A|162
6OLI|1|t|C|163
6OLI|1|t|C|164
*
6OLI|1|t|G|263
6OLI|1|t|U|264
6OLI|1|t|C|265
6OLI|1|t|U|266

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain M

60S ribosomal protein L13

Chain j

60S ribosomal protein L36