IL_6OLI_125

3D structure

PDB id

6OLI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGCG*CCGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLI_125 not in the Motif Atlas

Geometric match to IL_3WBM_003

Geometric discrepancy: 0.2333

The information below is about IL_3WBM_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

6OLI|1|t|G|472
6OLI|1|t|G|473
6OLI|1|t|C|474
6OLI|1|t|G|475
*
6OLI|1|t|C|667
6OLI|1|t|C|668
6OLI|1|t|G|669
6OLI|1|t|C|670

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain r

60S ribosomal protein L28