IL_6OLI_130

3D structure

PDB id

6OLI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGCCCGG*UCC

Length

10 nucleotides

Bulged bases

6OLI|1|t|C|495, 6OLI|1|t|C|496, 6OLI|1|t|C|497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLI_130 not in the Motif Atlas

Geometric match to IL_7KJT_002

Geometric discrepancy: 0.3324

The information below is about IL_7KJT_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32983.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

6OLI|1|t|G|493
6OLI|1|t|G|494
6OLI|1|t|C|495
6OLI|1|t|C|496
6OLI|1|t|C|497
6OLI|1|t|G|498
6OLI|1|t|G|499
*
6OLI|1|t|U|647
6OLI|1|t|C|648
6OLI|1|t|C|649

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain R

60S ribosomal protein L18

Chain b

60S ribosomal protein L27a