IL_6OLI_132

3D structure

PDB id

6OLI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUUUC*GGG

Length

8 nucleotides

Bulged bases

6OLI|1|t|U|507, 6OLI|1|t|U|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLI_132 not in the Motif Atlas

Geometric match to IL_1U6B_001

Geometric discrepancy: 0.264

The information below is about IL_1U6B_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

6OLI|1|t|C|505
6OLI|1|t|U|506
6OLI|1|t|U|507
6OLI|1|t|U|508
6OLI|1|t|C|509
*
6OLI|1|t|G|640
6OLI|1|t|G|641
6OLI|1|t|G|642

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain M

60S ribosomal protein L13

Chain b

60S ribosomal protein L27a