IL_6OLI_150

3D structure

PDB id

6OLI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCGAG*CCGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLI_150 not in the Motif Atlas

Geometric match to IL_5J7L_274

Geometric discrepancy: 0.2615

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6OLI|1|t|C|1413
6OLI|1|t|C|1414
6OLI|1|t|G|1415
6OLI|1|t|A|1416
6OLI|1|t|G|1417
*
6OLI|1|t|C|1432
6OLI|1|t|C|1433
6OLI|1|t|G|1434
6OLI|1|t|A|1435
6OLI|1|t|G|1436

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain R

60S ribosomal protein L18