IL_6OLI_163
3D structure
- PDB id
- 6OLI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CGGUAA*UAAAUG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OLI_163 not in the Motif Atlas
- Geometric match to IL_7A0S_027
- Geometric discrepancy: 0.1876
- The information below is about IL_7A0S_027
- Detailed Annotation
- 5x5 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_81631.1
- Basepair signature
- cWW-L-R-cSH-R-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
6OLI|1|t|C|1714
6OLI|1|t|G|1715
6OLI|1|t|G|1716
6OLI|1|t|U|1717
6OLI|1|t|A|1718
6OLI|1|t|A|1719
*
6OLI|1|t|U|1774
6OLI|1|t|A|1775
6OLI|1|t|A|1776
6OLI|1|t|A|1777
6OLI|1|t|U|1778
6OLI|1|t|G|1779
Current chains
- Chain t
- 28S ribosomal RNA
Nearby chains
- Chain E
- 5S ribosomal RNA; 5S rRNA
- Chain H
- 60S ribosomal protein L7
- Chain K
- 60S ribosomal protein L10
- Chain U
- 60S ribosomal protein L21
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