IL_6OLI_182

3D structure

PDB id

6OLI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

6OLI|1|t|A|1983

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLI_182 not in the Motif Atlas

Homologous match to IL_8C3A_059

Geometric discrepancy: 0.2676

The information below is about IL_8C3A_059

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

6OLI|1|t|G|1982
6OLI|1|t|A|1983
6OLI|1|t|G|1984
6OLI|1|t|U|1985
6OLI|1|t|G|1986
*
6OLI|1|t|C|1995
6OLI|1|t|U|1996
6OLI|1|t|C|1997

Current chains

Chain t

28S ribosomal RNA

Nearby chains