IL_6OLI_198

3D structure

PDB id

6OLI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAG*CGUG

Length

7 nucleotides

Bulged bases

6OLI|1|t|U|2666

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLI_198 not in the Motif Atlas

Geometric match to IL_4V9F_076

Geometric discrepancy: 0.2537

The information below is about IL_4V9F_076

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_87316.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

12

Unit IDs

6OLI|1|t|C|2625
6OLI|1|t|A|2626
6OLI|1|t|G|2627
*
6OLI|1|t|C|2664
6OLI|1|t|G|2665
6OLI|1|t|U|2666
6OLI|1|t|G|2667

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain h

60S ribosomal protein L34