IL_6OLZ_002

3D structure

PDB id

6OLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AUC*GU

Length

5 nucleotides

Bulged bases

6OLZ|1|A2|U|13

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLZ_002 not in the Motif Atlas

Homologous match to IL_8C3A_003

Geometric discrepancy: 0.2558

The information below is about IL_8C3A_003

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6OLZ|1|A2|A|12
6OLZ|1|A2|U|13
6OLZ|1|A2|C|14
*
6OLZ|1|A3|G|143
6OLZ|1|A3|U|144

Current chains

Chain A2

28S ribosomal RNA

Chain A3

5.8S ribosomal RNA

Nearby chains

Chain AG

60S ribosomal protein L7a

Chain AN

60S ribosomal protein L15

Chain AX

60S ribosomal protein L23a