IL_6OLZ_047

3D structure

PDB id

6OLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGC*GC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLZ_047 not in the Motif Atlas

Geometric match to IL_4V9F_005

Geometric discrepancy: 0.2057

The information below is about IL_4V9F_005

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

6OLZ|1|A2|G|1072
6OLZ|1|A2|G|1073
6OLZ|1|A2|C|1074
*
6OLZ|1|A2|G|1188
6OLZ|1|A2|C|1189

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AF

60S ribosomal protein L7

Chain AT

60S ribosomal protein L21