IL_6OLZ_097

3D structure

PDB id

6OLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAGUGG*CGC

Length

9 nucleotides

Bulged bases

6OLZ|1|A2|G|2525

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLZ_097 not in the Motif Atlas

Geometric match to IL_1U6B_001

Geometric discrepancy: 0.2315

The information below is about IL_1U6B_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

6OLZ|1|A2|G|2521
6OLZ|1|A2|A|2522
6OLZ|1|A2|G|2523
6OLZ|1|A2|U|2524
6OLZ|1|A2|G|2525
6OLZ|1|A2|G|2526
*
6OLZ|1|A2|C|2751
6OLZ|1|A2|G|2752
6OLZ|1|A2|C|2753

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain A3

5.8S ribosomal RNA; 5.8S rRNA

Chain Ak

60S ribosomal protein L38