IL_6OLZ_114

3D structure

PDB id

6OLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCAG*CG

Length

6 nucleotides

Bulged bases

6OLZ|1|A2|C|3672

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLZ_114 not in the Motif Atlas

Homologous match to IL_5TBW_084

Geometric discrepancy: 0.1982

The information below is about IL_5TBW_084

Detailed Annotation

Major groove intercalation

Broad Annotation

No text annotation

Motif group

IL_88739.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

6OLZ|1|A2|C|3671
6OLZ|1|A2|C|3672
6OLZ|1|A2|A|3673
6OLZ|1|A2|G|3674
*
6OLZ|1|A2|C|3720
6OLZ|1|A2|G|3721

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AA

60S ribosomal protein L8

Chain B1

Small subunit ribosomal RNA; SSU rRNA