IL_6OLZ_138

3D structure

PDB id

6OLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLZ_138 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.1764

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6OLZ|1|A2|C|4374
6OLZ|1|A2|C|4375
6OLZ|1|A2|A|4376
6OLZ|1|A2|A|4377
6OLZ|1|A2|G|4378
*
6OLZ|1|A2|C|4388
6OLZ|1|A2|G|4389
6OLZ|1|A2|A|4390
6OLZ|1|A2|C|4391
6OLZ|1|A2|G|4392

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AI

60S ribosomal protein L10

Chain Am

60S ribosomal protein L40