IL_6OLZ_170

3D structure

PDB id

6OLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCCG*CGGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLZ_170 not in the Motif Atlas

Homologous match to IL_7A0S_104

Geometric discrepancy: 0.5681

The information below is about IL_7A0S_104

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05192.7

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

6OLZ|1|A4|C|28
6OLZ|1|A4|C|29
6OLZ|1|A4|C|30
6OLZ|1|A4|G|31
*
6OLZ|1|A4|C|46
6OLZ|1|A4|G|47
6OLZ|1|A4|G|48
6OLZ|1|A4|A|49
6OLZ|1|A4|A|50
6OLZ|1|A4|G|51

Current chains

Chain A4

5S ribosomal RNA

Nearby chains

Chain AD

60S ribosomal protein L5

Chain AJ

60S ribosomal protein L11