IL_6OLZ_197

3D structure

PDB id

6OLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLZ_197 not in the Motif Atlas

Geometric match to IL_4M4O_004

Geometric discrepancy: 0.3894

The information below is about IL_4M4O_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

6OLZ|1|B1|C|532
6OLZ|1|B1|A|533
6OLZ|1|B1|G|534
*
6OLZ|1|B1|C|550
6OLZ|1|B1|U|551
6OLZ|1|B1|G|552

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BJ

40S ribosomal protein S9

Chain Be

40S ribosomal protein S30