IL_6OLZ_229

3D structure

PDB id

6OLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLZ_229 not in the Motif Atlas

Geometric match to IL_4P3U_006

Geometric discrepancy: 0.2241

The information below is about IL_4P3U_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

78

Unit IDs

6OLZ|1|B1|G|1270
6OLZ|1|B1|C|1271
6OLZ|1|B1|C|1272
*
6OLZ|1|B1|G|1510
6OLZ|1|B1|U|1511
6OLZ|1|B1|C|1512

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BK

40S ribosomal protein S10

Chain BP

40S ribosomal protein S15

Chain Bd

40S ribosomal protein S29

Chain Bf

Ubiquitin-40S ribosomal protein S27a