IL_6OLZ_262

3D structure

PDB id

6OLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGUCG*CCGGA

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLZ_262 not in the Motif Atlas

Geometric match to IL_8D29_010

Geometric discrepancy: 0.3962

The information below is about IL_8D29_010

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.2

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

6OLZ|1|A2|U|486
6OLZ|1|A2|G|487
6OLZ|1|A2|U|488
6OLZ|1|A2|C|489
6OLZ|1|A2|G|490
*
6OLZ|1|A2|C|651
6OLZ|1|A2|C|652
6OLZ|1|A2|G|653
6OLZ|1|A2|G|654
6OLZ|1|A2|A|655

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AC

60S ribosomal protein L4

Chain AQ

60S ribosomal protein L18