IL_6OLZ_281

3D structure

PDB id

6OLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAGUGGC*GCGCC

Length

13 nucleotides

Bulged bases

6OLZ|1|A2|G|2523, 6OLZ|1|A2|U|2524, 6OLZ|1|A2|G|2525

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLZ_281 not in the Motif Atlas

Geometric match to IL_7VYX_008

Geometric discrepancy: 0.3838

The information below is about IL_7VYX_008

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.2

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

6OLZ|1|A2|G|2520
6OLZ|1|A2|G|2521
6OLZ|1|A2|A|2522
6OLZ|1|A2|G|2523
6OLZ|1|A2|U|2524
6OLZ|1|A2|G|2525
6OLZ|1|A2|G|2526
6OLZ|1|A2|C|2527
*
6OLZ|1|A2|G|2750
6OLZ|1|A2|C|2751
6OLZ|1|A2|G|2752
6OLZ|1|A2|C|2753
6OLZ|1|A2|C|2754

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain A3

5.8S ribosomal RNA; 5.8S rRNA

Chain Ag

60S ribosomal protein L34

Chain Ak

60S ribosomal protein L38