IL_6OLZ_284

3D structure

PDB id

6OLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UCC*GAGA

Length

7 nucleotides

Bulged bases

6OLZ|1|A2|A|3799

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLZ_284 not in the Motif Atlas

Geometric match to IL_4E48_004

Geometric discrepancy: 0.1973

The information below is about IL_4E48_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

6OLZ|1|A2|U|3602
6OLZ|1|A2|C|3603
6OLZ|1|A2|C|3604
*
6OLZ|1|A2|G|3798
6OLZ|1|A2|A|3799
6OLZ|1|A2|G|3800
6OLZ|1|A2|A|3801

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain An

60S ribosomal protein L41

Chain B1

Small subunit ribosomal RNA; SSU rRNA