IL_6OLZ_314

3D structure

PDB id

6OLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUUUA*UUGAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLZ_314 not in the Motif Atlas

Geometric match to IL_8D29_010

Geometric discrepancy: 0.2927

The information below is about IL_8D29_010

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.2

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

6OLZ|1|B1|G|1727
6OLZ|1|B1|U|1728
6OLZ|1|B1|U|1729
6OLZ|1|B1|U|1730
6OLZ|1|B1|A|1731
*
6OLZ|1|B1|U|1803
6OLZ|1|B1|U|1804
6OLZ|1|B1|G|1805
6OLZ|1|B1|A|1806
6OLZ|1|B1|C|1807

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain AV

60S ribosomal protein L23

Chain BI

40S ribosomal protein S8