IL_6OM0_034

3D structure

PDB id

6OM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OM0_034 not in the Motif Atlas

Geometric match to IL_4ERD_001

Geometric discrepancy: 0.3213

The information below is about IL_4ERD_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44609.2

Basepair signature

cWW-cWW

Number of instances in this motif group

24

Unit IDs

6OM0|1|S2|U|366
6OM0|1|S2|U|367
6OM0|1|S2|U|368
6OM0|1|S2|C|369
6OM0|1|S2|G|370
6OM0|1|S2|A|371
*
6OM0|1|S2|U|393
6OM0|1|S2|G|394

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SI

40S ribosomal protein S8

Chain SL

40S ribosomal protein S11

Chain t

Large subunit ribosomal RNA; LSU rRNA