IL_6OM0_041
3D structure
- PDB id
- 6OM0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAG*CGAGGAUC
- Length
- 11 nucleotides
- Bulged bases
- 6OM0|1|S2|G|588, 6OM0|1|S2|G|589, 6OM0|1|S2|U|591
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OM0_041 not in the Motif Atlas
- Homologous match to IL_8C3A_420
- Geometric discrepancy: 0.2307
- The information below is about IL_8C3A_420
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_14882.1
- Basepair signature
- cWW-tSH-L-cWW-L-L-R-L
- Number of instances in this motif group
- 1
Unit IDs
6OM0|1|S2|G|563
6OM0|1|S2|A|564
6OM0|1|S2|G|565
*
6OM0|1|S2|C|585
6OM0|1|S2|G|586
6OM0|1|S2|A|587
6OM0|1|S2|G|588
6OM0|1|S2|G|589
6OM0|1|S2|A|590
6OM0|1|S2|U|591
6OM0|1|S2|C|592
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SJ
- 40S ribosomal protein S9
- Chain Se
- 40S ribosomal protein S30
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