IL_6OM0_112

3D structure

PDB id

6OM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGUC*GCUAC

Length

9 nucleotides

Bulged bases

6OM0|1|t|A|1286

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OM0_112 not in the Motif Atlas

Geometric match to IL_3CUL_002

Geometric discrepancy: 0.3962

The information below is about IL_3CUL_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

6OM0|1|t|G|437
6OM0|1|t|G|438
6OM0|1|t|U|439
6OM0|1|t|C|440
*
6OM0|1|t|G|1283
6OM0|1|t|C|1284
6OM0|1|t|U|1285
6OM0|1|t|A|1286
6OM0|1|t|C|1287

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain D

5.8S ribosomal RNA; 5.8S rRNA

Chain f

60S ribosomal protein L32

Chain g

60S ribosomal protein L35a