IL_6OM0_158
3D structure
- PDB id
- 6OM0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGGUAA*UAAAUG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OM0_158 not in the Motif Atlas
- Geometric match to IL_7A0S_027
- Geometric discrepancy: 0.1763
- The information below is about IL_7A0S_027
- Detailed Annotation
- 5x5 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_81631.1
- Basepair signature
- cWW-L-R-cSH-R-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
6OM0|1|t|C|1714
6OM0|1|t|G|1715
6OM0|1|t|G|1716
6OM0|1|t|U|1717
6OM0|1|t|A|1718
6OM0|1|t|A|1719
*
6OM0|1|t|U|1774
6OM0|1|t|A|1775
6OM0|1|t|A|1776
6OM0|1|t|A|1777
6OM0|1|t|U|1778
6OM0|1|t|G|1779
Current chains
- Chain t
- 28S ribosomal RNA
Nearby chains
- Chain E
- 5S ribosomal RNA; 5S rRNA
- Chain H
- 60S ribosomal protein L7
- Chain K
- 60S ribosomal protein L10
- Chain U
- 60S ribosomal protein L21
Coloring options: