IL_6OM0_179
3D structure
- PDB id
- 6OM0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CCUUGAAG*UGGAG
- Length
- 13 nucleotides
- Bulged bases
- 6OM0|1|t|U|2284
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OM0_179 not in the Motif Atlas
- Homologous match to IL_5TBW_059
- Geometric discrepancy: 0.15
- The information below is about IL_5TBW_059
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.5
- Basepair signature
- cWW-cWW-tSS-tSH-tHS-cWW-tHS
- Number of instances in this motif group
- 32
Unit IDs
6OM0|1|t|C|2281
6OM0|1|t|C|2282
6OM0|1|t|U|2283
6OM0|1|t|U|2284
6OM0|1|t|G|2285
6OM0|1|t|A|2286
6OM0|1|t|A|2287
6OM0|1|t|G|2288
*
6OM0|1|t|U|2308
6OM0|1|t|G|2309
6OM0|1|t|G|2310
6OM0|1|t|A|2311
6OM0|1|t|G|2312
Current chains
- Chain t
- 28S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain D
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain Q
- 60S ribosomal protein L17
- Chain Z
- 60S ribosomal protein L26
- Chain f
- 60S ribosomal protein L32
Coloring options: