IL_6OM0_213

3D structure

PDB id

6OM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

6OM0|1|t|A|4347

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OM0_213 not in the Motif Atlas

Homologous match to IL_5TBW_094

Geometric discrepancy: 0.0971

The information below is about IL_5TBW_094

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

6OM0|1|t|G|3887
6OM0|1|t|A|3888
*
6OM0|1|t|U|4346
6OM0|1|t|A|4347
6OM0|1|t|C|4348
6OM0|1|t|C|4349

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L8

Chain u

Transfer RNA; tRNA

Chain y

Proprotein convertase subtilisin/kexin type 9