IL_6OM0_223

3D structure

PDB id

6OM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUG*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OM0_223 not in the Motif Atlas

Homologous match to IL_5TBW_104

Geometric discrepancy: 0.0706

The information below is about IL_5TBW_104

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48779.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

6OM0|1|t|U|4365
6OM0|1|t|U|4366
6OM0|1|t|G|4367
*
6OM0|1|t|U|4401
6OM0|1|t|G|4402

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain K

60S ribosomal protein L10