IL_6OM0_260

3D structure

PDB id

6OM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OM0_260 not in the Motif Atlas

Homologous match to IL_8P9A_415

Geometric discrepancy: 0.4696

The information below is about IL_8P9A_415

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

78

Unit IDs

6OM0|1|S2|C|879
6OM0|1|S2|G|880
6OM0|1|S2|G|881
*
6OM0|1|S2|C|905
6OM0|1|S2|U|906
6OM0|1|S2|G|907

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain S

60S ribosomal protein L19

Chain SL

40S ribosomal protein S11