3D structure

PDB id
6OM6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of trans-translation inhibitor bound to E. coli 70S ribosome with P site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
ACUAGG*CUGU
Length
10 nucleotides
Bulged bases
6OM6|1|1|G|1992
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OM6_067 not in the Motif Atlas
Homologous match to IL_4WF9_065
Geometric discrepancy: 0.0791
The information below is about IL_4WF9_065
Detailed Annotation
Intercalated tWH
Broad Annotation
Intercalated tWH
Motif group
IL_28217.1
Basepair signature
cWW-L-R-L-cWW-L-L
Number of instances in this motif group
10

Unit IDs

6OM6|1|1|A|1669
6OM6|1|1|C|1670
6OM6|1|1|U|1671
6OM6|1|1|A|1672
6OM6|1|1|G|1673
6OM6|1|1|G|1674
*
6OM6|1|1|C|1990
6OM6|1|1|U|1991
6OM6|1|1|G|1992
6OM6|1|1|U|1993

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain C
50S ribosomal protein L3
Chain K
50S ribosomal protein L14

Coloring options:


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