IL_6OM6_133

3D structure

PDB id

6OM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trans-translation inhibitor bound to E. coli 70S ribosome with P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OM6_133 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.1059

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

6OM6|1|2|U|409
6OM6|1|2|G|410
6OM6|1|2|A|411
6OM6|1|2|A|412
6OM6|1|2|G|413
6OM6|1|2|A|414
6OM6|1|2|A|415
6OM6|1|2|G|416
*
6OM6|1|2|U|427
6OM6|1|2|G|428
6OM6|1|2|U|429
6OM6|1|2|A|430
6OM6|1|2|A|431
6OM6|1|2|A|432
6OM6|1|2|G|433

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S4