IL_6OM6_158

3D structure

PDB id

6OM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trans-translation inhibitor bound to E. coli 70S ribosome with P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAG*UGUGCCUUCGGGAAC

Length

19 nucleotides

Bulged bases

6OM6|1|2|U|1025, 6OM6|1|2|U|1030

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OM6|1|2|G|1003
6OM6|1|2|A|1004
6OM6|1|2|A|1005
6OM6|1|2|G|1006
*
6OM6|1|2|U|1023
6OM6|1|2|G|1024
6OM6|1|2|U|1025
6OM6|1|2|G|1026
6OM6|1|2|C|1027
6OM6|1|2|C|1028
6OM6|1|2|U|1029
6OM6|1|2|U|1030
6OM6|1|2|C|1031
6OM6|1|2|G|1032
6OM6|1|2|G|1033
6OM6|1|2|G|1034
6OM6|1|2|A|1035
6OM6|1|2|A|1036
6OM6|1|2|C|1037

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain s

30S ribosomal protein S14