IL_6OM6_167

3D structure

PDB id

6OM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trans-translation inhibitor bound to E. coli 70S ribosome with P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGC*GAGGAAG

Length

11 nucleotides

Bulged bases

6OM6|1|2|U|1159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OM6_167 not in the Motif Atlas

Homologous match to IL_4LFB_050

Geometric discrepancy: 0.1857

The information below is about IL_4LFB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32376.1

Basepair signature

cWW-cSH-cWW-tWH-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

6OM6|1|2|C|1158
6OM6|1|2|U|1159
6OM6|1|2|G|1160
6OM6|1|2|C|1161
*
6OM6|1|2|G|1175
6OM6|1|2|A|1176
6OM6|1|2|G|1177
6OM6|1|2|G|1178
6OM6|1|2|A|1179
6OM6|1|2|A|1180
6OM6|1|2|G|1181

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain g

30S ribosomal protein S2

Chain n

30S ribosomal protein S9