IL_6OM6_171

3D structure

PDB id

6OM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trans-translation inhibitor bound to E. coli 70S ribosome with P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OM6_171 not in the Motif Atlas

Homologous match to IL_5J7L_057

Geometric discrepancy: 0.0924

The information below is about IL_5J7L_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

6OM6|1|2|C|1303
6OM6|1|2|G|1304
6OM6|1|2|G|1305
6OM6|1|2|A|1306
6OM6|1|2|U|1307
6OM6|1|2|U|1308
*
6OM6|1|2|A|1329
6OM6|1|2|U|1330
6OM6|1|2|G|1331
6OM6|1|2|A|1332
6OM6|1|2|A|1333
6OM6|1|2|G|1334

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain r

30S ribosomal protein S13