3D structure

PDB id
6OPE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GUGGAUG*CUGAAAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OPE_060 not in the Motif Atlas
Homologous match to IL_7RQB_001
Geometric discrepancy: 0.105
The information below is about IL_7RQB_001
Detailed Annotation
Triple sheared with non-canonical cWW
Broad Annotation
Triple sheared
Motif group
IL_66414.6
Basepair signature
cWW-L-R-tSH-tSH-tHS-cWW-cWW
Number of instances in this motif group
7

Unit IDs

6OPE|1|RA|G|24
6OPE|1|RA|U|25
6OPE|1|RA|G|26
6OPE|1|RA|G|27
6OPE|1|RA|A|28
6OPE|1|RA|U|29
6OPE|1|RA|G|30
*
6OPE|1|RA|C|510
6OPE|1|RA|U|511
6OPE|1|RA|G|512
6OPE|1|RA|A|513
6OPE|1|RA|A|514
6OPE|1|RA|A|515
6OPE|1|RA|C|516

Current chains

Chain RA
23S rRNA

Nearby chains

Chain R5
50S ribosomal protein L32
Chain RU
50S ribosomal protein L20
Chain RW
50S ribosomal protein L22

Coloring options:


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