IL_6OPE_149

3D structure

PDB id

6OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGA*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OPE_149 not in the Motif Atlas

Geometric match to IL_4WF9_091

Geometric discrepancy: 0.1432

The information below is about IL_4WF9_091

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

6OPE|1|RA|U|2457
6OPE|1|RA|G|2458
6OPE|1|RA|A|2459
*
6OPE|1|RA|U|2493
6OPE|1|RA|G|2494

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QY

Transfer RNA; tRNA

Chain R0

50S ribosomal protein L27

Chain RQ

50S ribosomal protein L16