IL_6OPE_153

3D structure

PDB id

6OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

6OPE|1|RA|G|2576, 6OPE|1|RA|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OPE_153 not in the Motif Atlas

Geometric match to IL_4WF9_095

Geometric discrepancy: 0.1074

The information below is about IL_4WF9_095

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

6OPE|1|RA|C|2510
6OPE|1|RA|U|2511
6OPE|1|RA|C|2512
*
6OPE|1|RA|G|2574
6OPE|1|RA|C|2575
6OPE|1|RA|G|2576
6OPE|1|RA|A|2577
6OPE|1|RA|G|2578

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R5

50S ribosomal protein L32

Chain RE

50S ribosomal protein L3