IL_6OPE_161

3D structure

PDB id

6OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CU*AUAAG

Length

7 nucleotides

Bulged bases

6OPE|1|RA|A|2713

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OPE_161 not in the Motif Atlas

Homologous match to IL_7RQB_106

Geometric discrepancy: 0.0711

The information below is about IL_7RQB_106

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71530.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

6OPE|1|RA|C|2695
6OPE|1|RA|U|2696
*
6OPE|1|RA|A|2711
6OPE|1|RA|U|2712
6OPE|1|RA|A|2712|||A
6OPE|1|RA|A|2713
6OPE|1|RA|G|2714

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RR

50S ribosomal protein L17

Chain RT

50S ribosomal protein L19