IL_6OPE_166

3D structure

PDB id

6OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

6OPE|1|RB|A|66

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OPE_166 not in the Motif Atlas

Homologous match to IL_7RQB_111

Geometric discrepancy: 0.1427

The information below is about IL_7RQB_111

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

6OPE|1|RB|C|17
6OPE|1|RB|G|18
*
6OPE|1|RB|C|65
6OPE|1|RB|A|66
6OPE|1|RB|G|67

Current chains

Chain RB

5S rRNA

Nearby chains

Chain RA

Large subunit ribosomal RNA; LSU rRNA

Chain RS

50S ribosomal protein L18

Chain RZ

50S ribosomal protein L25