IL_6OPE_170

3D structure

PDB id

6OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAUGGUAC*GGAGAGUAG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OPE_170 not in the Motif Atlas

Homologous match to IL_7RQB_115

Geometric discrepancy: 0.0768

The information below is about IL_7RQB_115

Detailed Annotation

Bacterial 5S Loop E

Broad Annotation

Loop E

Motif group

IL_56455.3

Basepair signature

cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6OPE|1|RB|C|71
6OPE|1|RB|G|72
6OPE|1|RB|A|73
6OPE|1|RB|U|74
6OPE|1|RB|G|75
6OPE|1|RB|G|76
6OPE|1|RB|U|77
6OPE|1|RB|A|78
6OPE|1|RB|C|79
*
6OPE|1|RB|G|97
6OPE|1|RB|G|98
6OPE|1|RB|A|99
6OPE|1|RB|G|100
6OPE|1|RB|A|101
6OPE|1|RB|G|102
6OPE|1|RB|U|103
6OPE|1|RB|A|104
6OPE|1|RB|G|105

Current chains

Chain RB

5S rRNA

Nearby chains

Chain RA

Large subunit ribosomal RNA; LSU rRNA

Chain RQ

50S ribosomal protein L16

Chain RZ

50S ribosomal protein L25