IL_6OPE_187

3D structure

PDB id

6OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OPE_187 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1023

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

6OPE|1|XA|G|409
6OPE|1|XA|G|410
6OPE|1|XA|A|411
6OPE|1|XA|A|412
6OPE|1|XA|G|413
6OPE|1|XA|A|414
6OPE|1|XA|A|415
6OPE|1|XA|G|416
*
6OPE|1|XA|U|427
6OPE|1|XA|G|428
6OPE|1|XA|U|429
6OPE|1|XA|A|430
6OPE|1|XA|A|431
6OPE|1|XA|A|432
6OPE|1|XA|C|433

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XD

30S ribosomal protein S4