IL_6OPE_224

3D structure

PDB id

6OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OPE_224 not in the Motif Atlas

Geometric match to IL_3GM7_005

Geometric discrepancy: 0.145

The information below is about IL_3GM7_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

6OPE|1|XA|G|1405
6OPE|1|XA|U|1406
6OPE|1|XA|C|1407
*
6OPE|1|XA|G|1494
6OPE|1|XA|U|1495
6OPE|1|XA|C|1496

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XX

mRNA

Chain XY

Transfer RNA; tRNA

Chain YA

Large subunit ribosomal RNA; LSU rRNA