3D structure

PDB id
6OPE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CAU*GGG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OPE_226 not in the Motif Atlas
Homologous match to IL_5J7L_061
Geometric discrepancy: 0.1415
The information below is about IL_5J7L_061
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

6OPE|1|XA|C|1412
6OPE|1|XA|A|1413
6OPE|1|XA|U|1414
*
6OPE|1|XA|G|1486
6OPE|1|XA|G|1487
6OPE|1|XA|G|1488

Current chains

Chain XA
16S rRNA

Nearby chains

Chain XL
30S ribosomal protein S12
Chain YA
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1967 s