IL_6OPE_265

3D structure

PDB id

6OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCCCCAAG*CG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OPE_265 not in the Motif Atlas

Homologous match to IL_7RQB_037

Geometric discrepancy: 0.0761

The information below is about IL_7RQB_037

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_15861.7

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

6OPE|1|YA|C|1004
6OPE|1|YA|C|1005
6OPE|1|YA|C|1006
6OPE|1|YA|C|1007
6OPE|1|YA|C|1008
6OPE|1|YA|A|1009
6OPE|1|YA|A|1010
6OPE|1|YA|G|1011
*
6OPE|1|YA|C|1150
6OPE|1|YA|G|1151

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YN

50S ribosomal protein L13

Chain YU

50S ribosomal protein L20