IL_6OPE_326

3D structure

PDB id

6OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

6OPE|1|YA|A|2542

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OPE_326 not in the Motif Atlas

Homologous match to IL_7RQB_099

Geometric discrepancy: 0.1148

The information below is about IL_7RQB_099

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_95601.3

Basepair signature

cWW-tSH-cWW

Number of instances in this motif group

10

Unit IDs

6OPE|1|YA|U|2522
6OPE|1|YA|G|2523
*
6OPE|1|YA|C|2540
6OPE|1|YA|A|2541
6OPE|1|YA|A|2542
6OPE|1|YA|G|2543

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y9

50S ribosomal protein L36

Chain YN

50S ribosomal protein L13