IL_6ORD_041

3D structure

PDB id

6ORD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCU*G(2MG)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ORD_041 not in the Motif Atlas

Geometric match to IL_4WF9_042

Geometric discrepancy: 0.1561

The information below is about IL_4WF9_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6ORD|1|QA|G|1050
6ORD|1|QA|C|1051
6ORD|1|QA|U|1052
*
6ORD|1|QA|G|1206
6ORD|1|QA|2MG|1207
6ORD|1|QA|C|1208

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QC

30S ribosomal protein S3

Chain QN

30S ribosomal protein S14 type Z

Chain QY

Transfer RNA; tRNA