IL_6ORD_061

3D structure

PDB id

6ORD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGGGAG*CAG

Length

9 nucleotides

Bulged bases

6ORD|1|QA|G|1442|||B

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ORD_061 not in the Motif Atlas

Homologous match to IL_6CZR_172

Geometric discrepancy: 0.1451

The information below is about IL_6CZR_172

Detailed Annotation

Isolated basepair with bulged bases

Broad Annotation

Isolated basepair with bulged bases

Motif group

IL_97255.3

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

6ORD|1|QA|C|1440
6ORD|1|QA|G|1441
6ORD|1|QA|G|1442|||A
6ORD|1|QA|G|1442|||B
6ORD|1|QA|A|1442|||C
6ORD|1|QA|G|1443
*
6ORD|1|QA|C|1459
6ORD|1|QA|A|1460
6ORD|1|QA|G|1461

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QT

30S ribosomal protein S20

Chain RA

Large subunit ribosomal RNA; LSU rRNA

Chain RT

50S ribosomal protein L19