3D structure

PDB id
6ORD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
UGAGUAG*CGAAAG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6ORD_068 not in the Motif Atlas
Homologous match to IL_7RQB_007
Geometric discrepancy: 0.06
The information below is about IL_7RQB_007
Detailed Annotation
7x6 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_76042.2
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
9

Unit IDs

6ORD|1|RA|U|239
6ORD|1|RA|G|240
6ORD|1|RA|A|241
6ORD|1|RA|G|242
6ORD|1|RA|U|243
6ORD|1|RA|A|244
6ORD|1|RA|G|245
*
6ORD|1|RA|C|253
6ORD|1|RA|G|254
6ORD|1|RA|A|255
6ORD|1|RA|A|256
6ORD|1|RA|A|257
6ORD|1|RA|G|258

Current chains

Chain RA
23S rRNA

Nearby chains

Chain R8
50S ribosomal protein L35
Chain RP
50S ribosomal protein L15

Coloring options:


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