IL_6ORD_127

3D structure

PDB id

6ORD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

6ORD|1|RA|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ORD_127 not in the Motif Atlas

Homologous match to IL_7RQB_068

Geometric discrepancy: 0.0518

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6ORD|1|RA|C|1686
6ORD|1|RA|G|1687
6ORD|1|RA|U|1688
6ORD|1|RA|A|1689
6ORD|1|RA|A|1690
6ORD|1|RA|C|1691
*
6ORD|1|RA|G|1696
6ORD|1|RA|G|1697
6ORD|1|RA|A|1698
6ORD|1|RA|G|1699
6ORD|1|RA|A|1700
6ORD|1|RA|A|1701
6ORD|1|RA|G|1702

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA

Chain RD

50S ribosomal protein L2